Bacterial signals can sustain immune protection after further antigen recognition stops
Postcommitment differentiation instructionIn older-donor cultures, bacterial ribonucleic acid (RNA) signals to antigen-presenting cells (APCs) would sustain timely killing and functional antibody production after initial recognition.
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After initial cognate priming and the first matched T–B interaction, loss of microbial viability signals, rather than loss of presentable antigen itself, causes the adaptive delay following accelerated killing. The strong hypothesis is that continued APC sensing of bacterial RNA can sustain already specified CD4-helper, CD8-effector and antibody-secreting-cell differentiation even after subsequent cognate antigen signaling is experimentally terminated. Independently preserving antigen therefore fails unless it also preserves the innate differentiation instruction; nonreplicating RNA stimulation can instead restore timely protection. The proposed causal substrate is the transient APC cytokine program maintained by microbial RNA.
In older-donor cultures, first document cognate priming and matched T–B interaction, then terminate further antigen-receptor signaling using independently validated interventions.
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Non-antigen-encoding bacterial RNA delivered selectively to APCs restores the onset of antigen-specific target killing and functional antibody production despite absent subsequent cognate signaling. Matched antigen extension without RNA-dependent instruction does not restore both deadlines. Rescue confined to CD8 proliferation, nonspecific cytokine release or pre-existing antibody secretion falsifies the strong hypothesis.
Rapid killing delays immune protection when cells cannot meet before antigen display ends predicts instead: With peptide identity, display amplitude, APC instruction and cell numbers matched, long or variable waits predict missed functional-response deadlines after rapid killing.
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Bringing cognate responders into contact earlier rescues cellular and humoral onset without antigen supplementation. Extending display preferentially recruits previously unprimed responders rather than accelerating differentiation of responders already primed. Failure of measured contact completion to predict rescue, together with rescue by RNA instruction or suppressor blockade at unchanged contact schedules, rejects this explanation.
Clearing dead immune cells releases a signal that delays adaptive protection predicts instead: At matched peptide–MHC trajectories, microbial-RNA instruction and cognate-contact schedules, sterile conditioned medium collected during post-killing efferocytosis transfers the adaptive delay to independently primed cultures. Selectively interrupting recipient PGE2-receptor signaling removes that transfer and restores functional response onset without extending antigen display. Absence of increased efferocytosis/PGE2 after accelerated killing, or failure of pathway interruption to rescue despite verified target engagement, rejects the hypothesis.