Drifting timing between antimicrobial defence and tissue repair causes repeated recovery failure
Information and sensingIn older-donor epithelial–immune co-cultures, with young-donor references, independently measured rhythms and coupling would predict when defence and repair stay aligned.
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Repeated-challenge failure arises from loss of feedback-mediated entrainment between independently oscillating antimicrobial deployment and epithelial repair readiness. The maladaptive state resides in their drifting relative phase, rather than accumulated injury. Timing correction stabilizes SPV_5 by restoring a protective phase relationship without increasing integrated immune activity, provided coupling exceeds intrinsic frequency mismatch and the locked phase places repair after adequate microbial control.
Independently measured frequencies and phase-response coupling predict the boundary between locking and phase slips in held-out co-cultures.
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Inside the boundary, small phase disturbances relax at approximately sqrt(K²−Δω²) per day; outside it, deterministic mean phase-slip speed approaches sqrt(Δω²−K²). Frequency retuning across that boundary restores bounded functional recovery delays without changing cumulative antimicrobial activity. A one-time phase reset outside the boundary produces only temporary improvement. Failure of these parameter-based predictions despite reproducible oscillations rejects this specific mechanism.
Clock proteins block repair in older tissue independently of their timing role predicts instead: In older-donor cultures, selectively removing clock-protein occupancy from implicated repair regulatory elements restores repeated-challenge recovery while leaving frequency mismatch outside the independently estimated Adler locking range.
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Conversely, retiming intact clocks fails when that occupancy is experimentally maintained. Most decisively, verified arrhythmic cultures with the brake removed maintain young-reference clearance-to-repair delays across irregular challenges, despite having no phase relationship to lock.